Talks
- Integrative models of nuclear DNA organization.
Invited talk, Department of Biological Sciences, Purdue University, March 2025
Invited talk, Department of Computational and Systems Biology, University of Pittsburgh, March 2025
Invited talk, Department of Genetics, Yale University, February 2025
Invited talk, Department of Human Genetics, University of Utah, February 2025
Invited talk, David R. Cheriton School of Computer Science, University of Waterloo, February 2025
Invited talk, Koita Centre for Digital Health, IIT Bombay, February 2025
Invited talk, Department of Biology, University of Pennsylvania, January 2025
Invited talk, Department of Molecular Biosciences and The Oden Institute for Computational Engineering & Sciences, University of Texas at Austin, January 2025
Speaker, Department of Genome Sciences Seminar Series, University of Washington, Seattle, August 2024
Invited talk, Department of Biosciences and Bioengineering, IIT Bombay, January 2024
- Predicting trans Hi C contacts from DNA sequence with TwinC.
ISMB 2024, Montreal, Canada
4D Nucleome Genomic Organization of Mammalian Embryogenesis Center, UW, Seattle, USA
MLCB 2023, Seattle, USA
4D-Nucleome Monthly Meeting 2023, UW, Seattle, USA
- Bidirectional translation between Hi-C and ATAC-seq data across species using Chrome-Zoo.
ISMB/ECCB 2023, Lyon, France
Combi Seminar 2023, UW, Seattle, USA
UW GS Retreat 2022, UW, Seattle, USA
DNA-Zoo Monthly Meeting 2022, Virtual Meeting
ENCODE Consortium Meeting 2022, Virtual Meeting
- Identifying common transcriptome signatures of cancer by interpreting deep learning models.
ISMB 2021, Virtual Conference, Presented by co-author Mathieu Q.V.
- RBP-Pokedex: Prediction of RBP knockdown effect via DNN experiment modeling.
ISMB 2020, Virtual Conference
- Improving interpretation of deep learning models: splicing codes as a case study.
ISMB/ECCB 2019, Basel, Switzerland
SAGES 2019, Philadelphia, USA
- Integrative Deep Models for Alternative Splicing.
ISMB/ECCB 2017, Prague, Czech Republic
Penn Research in Machine Learning Scholar's Seminar, October 2017, Philadelphia, USA
RNA Discussion Group, April 2017, Philadelphia, USA
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Posters
* represents equal contribution
- Predicting trans Hi-C contacts from DNA sequence with TwinC.
Anupama Jha, Borislav Hristov, Xiao Wang, Sheng Wang, William J. Greenleaf, Anshul Kundaje, Erez Lieberman Aiden, William Stafford Noble.
NHGRI Annual Meeting 2025, Philadelphia, USA
MLCB 2024, Seattle, USA
4D Nucleome Annual Meeting 2023, Boston, USA
- Chrome-Zoo: cross-species chromatin profile prediction using DNA Zoo data.
Anupama Jha, Jacob Schreiber, Olga Dudchenko, Georgi K. Marinov, Anshul Kundaje, William J. Greenleaf, Erez S. Lieberman Aiden, William Stafford Noble.
ISMB/ECCB 2023, Lyon, France
Genome Sciences Annual Retreat 2022, University of Washington, Seattle, Best Poster Award
- Identifying universal cancer transcriptome patterns by interpreting deep learning models.
Anupama Jha*, Mathieu Quesnel-Vallieres*, Andrei Thomas-Tikhonenko, Kristen Lynch, Yoseph Barash.
ISMB/ECCB 2022, Virtual, Presented by co-author Mathieu Q.V.
- RBP-Pokedex: Prediction of RBP knockdown effect via DNN experiment modeling.
Anupama Jha, Matthew R. Gazzara, Caleb M. Radens, Paul R. Jewell, Yoseph Barash.
ISMB 2020, Virtual
- Interpretation of deep learning models in genomics: splicing codes as a case study.
Anupama Jha, Joseph K. Aicher, Deependra Singh, Yoseph Barash.
ISMB/ECCB 2019, Basel, Switzerland
SAGES 2019, Philadelphia, USA
- Assembling the Building Blocks for a Unified Splicing Code.
Anupama Jha, Matthew R. Gazzara, Yoseph Barash.
ISMB 2018, Chicago, USA
- Integrative Deep Models for Alternative Splicing.
Anupama Jha, Matthew R. Gazzara, Yoseph Barash.
ISMB/ECCB 2017, Prague, Czech Republic
SAGES 2017, Philadelphia, USA, Best Poster Award
RNA Biology & Cancer Symposium 2017, University of Pennsylvania, Philadelphia, USA, Best Poster Award
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