Talks
- Predicting trans Hi C contacts from DNA sequence with TwinC.
MLCB 2023, Seattle, USA
4D-Nucleome Monthly Meeting 2023, UW, Seattle, USA
- Chrome-Zoo: cross-species chromatin profile prediction using DNA Zoo data.
ISMB/ECCB 2023, Lyon, France
Combi Seminar 2023, UW, Seattle, USA
UW GS Retreat 2022, UW, Seattle, USA
4D-Nucleome Monthly Meeting 2022, UW, Seattle, USA
DNA-Zoo Monthly Meeting 2022, Virtual Meeting
ENCODE Consortium Meeting 2022, Virtual Meeting
- Identifying common transcriptome signatures of cancer by interpreting deep learning models.
ISMB 2021, Virtual Conference, Presented by co-author Mathieu Q.V.
- RBP-Pokedex: Prediction of RBP knockdown effect via DNN experiment modeling.
ISMB 2020, Virtual Conference
- Improving interpretation of deep learning models: splicing codes as a case study.
ISMB/ECCB 2019, Basel, Switzerland
SAGES 2019, Philadelphia, USA
- Integrative Deep Models for Alternative Splicing.
ISMB/ECCB 2017, Prague, Czech Republic
Penn Research in Machine Learning (PRiML) Group, October 2017, Philadelphia, USA
RNA Discussion Group, April 2017, Philadelphia, USA
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Posters
* represents equal contribution
- Predicting trans Hi-C contacts from DNA sequence with TwinC.
Anupama Jha, Borislav Hristov, Xiao Wang, Sheng Wang, William J. Greenleaf, Anshul Kundaje, Erez Lieberman Aiden, William Stafford Noble.
MLCB 2023
4DN Annual Meeting 2023
- Chrome-Zoo: cross-species chromatin profile prediction using DNA Zoo data.
Anupama Jha, Jacob Schreiber, Olga Dudchenko, Georgi K. Marinov, Anshul Kundaje, William J. Greenleaf, Erez S. Lieberman Aiden, William Stafford Noble.
UW GS Retreat 2022, Best Poster Award
ISMB/ECCB 2023
- Identifying universal cancer transcriptome patterns by interpreting deep learning models.
Anupama Jha*, Mathieu Quesnel-Vallieres*, Andrei Thomas-Tikhonenko, Kristen Lynch, Yoseph Barash.
ISMB/ECCB 2021, Presented by co-author Mathieu Q.V.
- RBP-Pokedex: Prediction of RBP knockdown effect via DNN experiment modeling.
Anupama Jha, Matthew R. Gazzara, Caleb M. Radens, Paul R. Jewell, Yoseph Barash.
ISMB 2020
- Interpretation of deep learning models in genomics: splicing codes as a case study.
Anupama Jha, Joseph K. Aicher, Deependra Singh, Yoseph Barash.
SAGES 2019, Selected abstract for oral talk
ISMB/ECCB 2019
- Assembling the Building Blocks for a Unifed Splicing Code.
Anupama Jha, Matthew R. Gazzara, Yoseph Barash.
ISMB 2018
- Integrative Deep Models for Alternative Splicing.
Anupama Jha, Matthew R. Gazzara, Yoseph Barash.
RNA Biology & Cancer Symposium 2017, Best Poster Award
SAGES 2017, Best Poster Award
ISMB/ECCB 2017
- Predictive modeling framework for splice factor knockdown experiments.
Anupama Jha, Matthew R. Gazzara, Yoseph Barash.
ISMB 2016
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